Job Annotation

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In order to successfully collect accounting data users are requested to annotate each of their job submissions with their HP-SEE application. Although technically this is required only for HP-SEE users with more than one application, annotations of jobs are strongly encouraged for all users.

Contents

Annotating on TORQUE

TORQUE jobs can be easily annotated with the account string flag. Users can either annotated their jobs in the qsub command:

   qsub -A [HP-SEE Application Name] shell.sh

or in the submission shell script using a PBS directive:

   #PBS -A [HP-SEE Application Name]

Sites using TORQUE:

Annotating on SGE

SGE configuration

HP-SEE application names should be added as project names to the SGE database. This script will help you by this. It imports the names from the SEE LDAP: Ge_see-ldap_sync.sh.tgz‎

Usage

Users can either annotated their jobs in the qsub command:

   qsub -P [HP-SEE Application Name] shell.sh

or in the submission shell script using a SGE directive:

   #$ -P [HP-SEE Application Name]

Sites using SGE:

Annotating on LoadLeveler

todo

Recognized Application Names

  • CompChem VRC
    • CFDOF
    • CompChem
    • FMD-PA
    • HC-MD-QM-CS
    • ISyMAB
    • MDCisplatin
    • PCACIC
  • CompPhys VRC
    • AMR_PAR
    • EagleEye
    • FAMAD
    • FuzzyCmeans
    • GENETATOMICS
    • GIM
    • HAG
    • HMLQCD
    • NUQG
    • SET
    • SFHG
    • SIMPLE-TS_2D
  • LifeSci VRC
    • CMSLTM
    • DeepAligner
    • DiseaseGene
    • DNAMA
    • MDSCS
    • miRs
    • MSBP
  • NewApps VRC
    • ISTORM
    • ARP23
    • HPS
    • CQS
    • TDN-SIM
    • TCR-MHC
    • DynAPSNeur
    • IPA2SPE
    • HGRF
    • NUM-EXP-NAT-CONV
    • PhyloTree
    • SU3-GT
    • PALSC-AMC
  • FastTrack VRC
    • LNAWENR
    • ARMSATGEO
    • SyMBA_GPU
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