NEURON

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(Created page with "__TOC__ * Web site: link * Described version: xx.xx * Licensing: e.g. LGPL 3, BSD... * User documentation: link * Download: link * Source code: link == Authors/Maintainers == *...")
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__TOC__
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* Web site: link
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* Web site: http://www.neuron.yale.edu/neuron/
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* Described version: xx.xx
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* Described version: 7.1
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* Licensing: e.g. LGPL 3, BSD...
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* Licensing: e.g. GPL 2
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* User documentation: link
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* User documentation: http://www.neuron.yale.edu/neuron/
* Download: link
* Download: link
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* Source code: link
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* Source code: http://www.neuron.yale.edu/neuron/
== Authors/Maintainers ==
== Authors/Maintainers ==
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* Also origin, if the software comes from a specific project.
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* Ted Hines, N. Carnevale
== Summary ==
== Summary ==
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== Features ==
== Features ==
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* Listed features
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NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.
== Architectural/Functional Overview ==
== Architectural/Functional Overview ==
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* high level design info, how it works, performance  - may be a link, or several links
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* http://www.neuron.yale.edu/neuron/what_is_neuron
== Usage Overview ==
== Usage Overview ==
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* If possible with small example - may be a link
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* http://www.neuron.yale.edu/neuron/what_is_neuron
== Dependacies ==
== Dependacies ==
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* list of all relevant dependencies on other libraries
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* Interviews Graphics Library
== HP-SEE Applications ==
== HP-SEE Applications ==
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* Applications using it
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* [CMSLTM]
== Resource Centers ==
== Resource Centers ==
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* RCs supporting it (with version number if not the same as above)
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== Usage by Other Projects and Communities ==
== Usage by Other Projects and Communities ==
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* If any
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== Recommendations for Configuration and Usage ==
== Recommendations for Configuration and Usage ==
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Please change MPI environment to openMPI before compiling
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Please describe here any common settings, configurations or conventions that would make the usage of this resource (library or tool) more interoperable or scalable across the HP-SEE resources. These recommendations should include anything that is related to the resource and is agreed upon by administrators and users, or across sites and applications. These recommendations should emerge from questions or discussions opened by site administrators or application developers, at any stage, including installation, development, usage, or adaptation for another HPC centre.
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Install neuron from source following the instructions in http://www.neuron.yale.edu/neuron/download/compile_linux
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Configure with -with-nrnpara option
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Provided descriptions should describe general or site specific aspects of resource installation, configuration and usage, or describe the guidelines or convention for deploying or using the resource within the local (user/site) or temporary environment (job). Examples are:
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* Common configuration settings of execution environment
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* Filesystem path or local access string
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* Environment variables to be set or used by applications
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* Options (e.g. additional modules) that are needed or required by applications and should be present
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* Minimum quantitative values (e.g. quotas) offered by the site
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* Location and format of some configuration or usage hint instructing applications on proper use of the resource or site specific policy
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* Key installation or configuration settings that should be set to a common value, or locally tweaked by local site admins
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* Conventions for application or job bound installation and usage of the resource
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Revision as of 09:38, 23 June 2011

Contents


Authors/Maintainers

  • Ted Hines, N. Carnevale

Summary

One paragraph description of purpose, targer area, approach.

Features

NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.

Architectural/Functional Overview

Usage Overview

Dependacies

  • Interviews Graphics Library

HP-SEE Applications

  • [CMSLTM]

Resource Centers

Usage by Other Projects and Communities

Recommendations for Configuration and Usage

Please change MPI environment to openMPI before compiling Install neuron from source following the instructions in http://www.neuron.yale.edu/neuron/download/compile_linux Configure with -with-nrnpara option

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