NEURON

From HP-SEE Wiki

Contents 1 Authors/Maintainers 2 Summary 3 Features 4 Architectural/Functional Overview 5 Usage Overview 6 Dependacies 7 HP-SEE Applications 8 Resource Centers 9 Usage by Other Projects and Communities 10 Recommendations for Configuration and Usage

• Web site: http://www.neuron.yale.edu/neuron/
• Described version: 7.1
• Licensing: e.g. GPL 2
• User documentation: http://www.neuron.yale.edu/neuron/
• Download: link
• Source code: http://www.neuron.yale.edu/neuron/

Authors/Maintainers

• Ted Hines, N. Carnevale

Summary

One paragraph description of purpose, targer area, approach.

Features

NEURON is a simulation environment for modeling individual neurons and networks of neurons. It provides tools for conveniently building, managing, and using models in a way that is numerically sound and computationally efficient. It is particularly well-suited to problems that are closely linked to experimental data, especially those that involve cells with complex anatomical and biophysical properties.

Architectural/Functional Overview

• http://www.neuron.yale.edu/neuron/what_is_neuron

Usage Overview

• http://www.neuron.yale.edu/neuron/what_is_neuron

Dependacies

• Interviews Graphics Library

HP-SEE Applications

• [CMSLTM]

Resource Centers

Usage by Other Projects and Communities

Recommendations for Configuration and Usage

Please change MPI environment to openMPI before compiling Install neuron from source following the instructions in http://www.neuron.yale.edu/neuron/download/compile_linux Configure with -with-nrnpara option