Scientific Papers

From HP-SEE Wiki

Revision as of 11:31, 25 July 2011

• [GRNET/IMBB] A. Oulas, N. Karathanasis, A. Louloupi, and P. Poirazi: "Finding Cancer-Associated miRNAs: Methods and Tools", Mol Biotechnol (2011) OnlineFirst; doi: 10.1007/s12033-011-9416-4

• [GRNET/IMBB] D. Krioneriti, A. Papoutsi, and P. Poirazi: "Mechanisms underlying the emergence of Up and Down states in a model PFC microcircuit", Accepted to the CNS 2011 meeting, Stocholm

• [GRNET/IMBB] A. Papoutsi, K. Sidiropoulou, and P. Poirazi: "Synaptic Versus Intrinsic Modulation of Persistent Activity in a PFC Microcircuit Model", Submitted

• [GRNET/IMBB] A. Oulas, N. Karathanasis, K. Kalantidis, I. Iliopoulos, and P. Poirazi: "Development of a MicroRNA Target Prediction Tool using Profile Hidden Markov Models", Manuscript in preparation

• [IICT-BAS] S. Ivanovska, A. Karivanova, and N. Manev: "Numerical Integration Using Sequences Generating Permutations", Accepted for publication in LNCS (2011)

• [IICT-BAS/IM-BAS] K. Shterev, S. Stefanov, and E. Atanassov: "A parallel algorithm with improved performance of Finite Volume Method (SIMPLE- TS)", Accepted for publication in LNCS (2011)

• [NIIF/SZTAKI] M. Kozlovszky, A. Balasko, and P. Kacsuk: "Enabling JChem application on grid", ISGC 2011 & OGF 31, Proceedings of Science, Taipei, Taiwan

• [IPB], A. Balaz, I. Vidanovic, D. Stojiljkovic, D. Vudragovic, A. Belic, and A. Bogojevic: "SPEEDUP Code for Calculation of Transition Amplitudes Via the Effective Action Approach", Commun. Comput. Phys. 10 (2011) Accepted; arxiv: 1105.0542

• [IPB], A. Balaz, O. Prnjat, D. Vudragovic, V. Slavnic, I. Liabotis, E. Atanassov, B. Jakimovski, and M. Savic: "Development of Grid E-Infrastructure in South-Eastern Europe", J. Grid Comput. 9 (2011) 135; doi: 10.1007/s10723-011-9185-0

• [IPB] A. Balaz, I. Vidanovic, A. Bogojevic, A. Belic, and A. Pelster: "Fast Converging Path Integrals for Time-Dependent Potentials: I. Recursive Calculation of Short-Time Expansion of the Propagator", J. Stat. Mech. (2011) P03004; doi: 10.1088/1742-5468/2011/03/P03004

• [IPB] A. Balaz, I. Vidanovic, A. Bogojevic, A. Belic, and A. Pelster: "Fast Converging Path Integrals for Time-Dependent Potentials: II. Generalization to Many-Body Systems and Real- Time Formalism", J. Stat. Mech. (2011) P03005; doi: 10.1088/1742-5468/2011/03/P03005

• [IPB] N. Vukmirovic, and L. W. Wang: "Density of States and Wave Function Localization in Disordered Conjugated Polymers: a Large Scale Computational Study", J. Phys. Chem. B 115 (2011) 1792; doi: 10.1021/jp1114527

• [IPB] N. Vukmirovic, and L. W. Wang: "Overlapping Fragments Method for Electronic Structure Calculation of Large Systems", J. Chem. Phys. 134 (2011) 094119; doi: 10.1063/1.3560956

• [IPB] O. Prnjat, A. Balaz, D. Vudragovic, I. Liabotis, C. Sener, B. Marovic, M. Kozlovszky, and G. Neagu: "SEE-GRID EInfrastructure for Regional EScience", Data Driven e-Science, p. 91- 103, Springer (2011), Book chapter in Data driven e-Science: Use Cases and Successful Applications of Distributed Computing Infrastructure, Eds. S. C. Lin and E. Yen, Springer (2011); doi: 10.1007/978-1-4419-8014-4_7

• [IPB] I. Vidanovic, A. Balaz, H. Al-Jibbouri, and A. Pelster: "Nonlinear BEC Dynamics by Harmonic Modulation of s-wave Scattering Length ", SFKM (2011) Belgrade, Serbia

• [IPB] A. Belic: "Numerical Simulations of Complex Systems in Quantum and Classical Physics", SFKM (2011) Belgrade, Serbia

• [IPB/FCUB] B. Marjanovic, I. Juranic, and G. Ciric-Marjanovic: "Revised Mechanism of Boyland Sims Oxidation", J. Phys. Chem. A 2011, 115(15), 3536-3550

• [IPB/FCUB] B. Marjanovic, I. Juranic, G. Ciric-Marjanovic, I. Pasti, M. Trchova, and P. Holler: "Chemical oxidative polymerization of benzocaine", Reactive & Functional Polymers 71 (2011) 704

• [IPB/FCUB] B. Marjanovic, I. Juranic, and G. Ciric-Marjanovic: "Comment on Revised Mechanism of Boyland-Sims Oxidation", Journal of Physical Chemistry A (2011) ACS ASAP

• [IPB/FCUB] I. Juranic: "Photochemical activation of air pollutants related to the preservation of cultural heritage", II International Congress "Engineering, Ecology and Materials in Processing Industry", March 2011, Jahorina, Bosnia and Herzegovina, Proceedings, E27, p. 1084-9

• [IPB/FCUB] I. Cvijetic, M. Vitorovic-Todorovic, I. Juranic, Dj. Nakarada, M. Radulovic, and B. Drakulic: "Kinetic and mechanism of the addition of piperidine and benzylamine to the aroylacrilic acid phenylamides", 49th Meeting of the Serbian Chemical Society, Kragujevac, Serbia, May 13-14, 2011, Proceeding, 167-171, OH09-P

• [IPB/FCUB] T. Verbic, M. Zloh, D. Stankovic, M. Sentic, D. Manojlovic, and I. Juranic: "Keto-enol Tautomerism of Aryldiketo Acids in Aqueous Solution. NMR Spectroscopy and Cyclic Voltammetry Study", 49th Meeting of the Serbian Chemical Society, Kragujevac, Serbia, May 13-14 2011, Proceedings, 16-20, AH01-O

• [IPB/FCUB] B. Drakulic, A. Pedrretti, M. Zloh, V. Slavnic, I. Juranic, M. Dabovic: "Range And Sensitivities of 2-[(Carboxymethyl)sulfanyl]-4-oxo-4-arylbutanoic Acids Property Spaces. Part 2. Multidimensional Free Energy Landscapes", 18th European Symposium on Quantitative Structure - Activity Relationships, "Discovery Informatics & Drug Design", 19-24 September 2010, Rhodes, Greece

• [UPT], N. Frasheri, B. Cico: "Analysis of the convergence of iterative geophysical inversion in parallel systems", Submitted in ICT Innovations 2011 Conference, 14-16 September 2011, Skopje

• [UKIM] D. Sahpaski, L. Pejov, and A. Misev: "Optimization of Intermolecular Interaction Potential Energy Parameters for Monte-Carlo and Molecular Dynamics Simulations Using Genetic Algorithms", Accepted for presentation at the Large-Scale Scientific Computations 2011, Sozopol, Bulgaria

• [RENAM] B. Rybakin: "Parallel programming for graphics accelerators", Under edition by Academician V.B. Betelin. Moscow, SIISI RAS, (2011) 261

• [RENAM] B. Rybakin, and M. Sider: "Numerical modeling of multidimensional problems of gravitational gas dynamics with high resolution schemes", Buletinul ASM, ser. Matematica. 1 (2010) 92

• [RENAM] N. Sider: "An adaptive mesh refinement technique for gas dynamics", Conferinţa Internatională a Tinerilor Cercetători, November 11-12, Chisinau, Moldova

• [RENAM] A. Altuhov, A. Bogatencov, A. Golubev, N. Iliuha, G. Secrieru: "Current State of Distributed Computing Infrastructure Deployment in Moldova", Proceedings of the 10th RoEduNet IEEE International Conference, "Networking in Education and Research", June 23-25 2011, Iasi, Romania, ISSN 2247-5443

• [GRENA] J.A.Kereselidze, Z.V.Pachulia, T.Sh.Zarqua. Quantum-chemical description of prototropic tautomerism of pyrimidine bases. Int. J. Chem.Heterocycl.Comp. 6, 856 (2009)

• [GRENA] T. Zarqua, J. Kereselidze and Z. Pachulia. Quantum-chemical description of the influenceof electronic effects of proton transfer in guanine-cytosine base pairs. J.Biol. Phys. Chem., v.10, pp.71-73 (2010)

• [GRENA] J. Kereselidze, T. Zarqua, Z. Paculia, M. Kvaraia. Quantum Chemical Modeling of the Mechanism of Formation of the Peptide Bond.International Conference on Computational Biology. Tokyo, Japan May 26-28, 2010.WASET, 65, p.1469 (2010)