Scientific Papers

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Revision as of 10:12, 24 July 2013

Journals

1. * [GRNET, IOPC] A. Avramopoulos, J. Li, N. Holzmann, G. Frenking, M. G. Papadopoulos
   On the Stability, Electronic Structure, and Nonlinear Optical Properties of HXeOXeF and FXeOXeF
   The Journal of Physical Chemistry A, 2011, 115 (36), pp. 10226–10236
   DOI: 10.1021/jp203961k
2. * [GRNET, IOPC] B. Skwara, R. G. Gora, R. Zalesny, P. Lipkowski, W. Bartkowiak, H. Reis, M. G. Papadopoulos
   Electronic Structure, Bonding, Spectra, and Linear and Nonlinear Electric Properties of Ti@C28
   The Journal of Physical Chemistry A, 2011, 115 (37), pp. 10370–10381
   DOI: 10.1021/jp206331n
3. * [GRNET, IMBB] Oulas A, Karathanasis N, Louloupi A, Poirazi P.
   Finding Cancer-Associated miRNAs: Methods and Tools
   Molecular Biotechnology, 2011, 49 (1), pp. 97-107
   DOI: 10.1007/s12033-011-9416-4
4. [GRNET, IOPC] G. Megariotis, A. Avramopoulos, M. G. Papadopoulos, H. Reis
   Computer Simulation of the Nonlinear Optical Properties of Langmuir–Blodgett Films of a Squaraine Derivative
   Journal of Physical Chemistry C, 2012, 116 (29), pp. 15449–15457
   DOI: 10.1021/jp304246a
5. [GRNET, IOPC] E. Koukaras, A. D. Zdetsis, P. Karamanis, C. Pouchan, A. Avramopoulos, M. G. Papadopoulos
   Structural and static electric response properties of highly symmetric lithiated silicon cages: Theoretical predictions
   Journal of Computational Chemistry, 2012, 33 (10), pp. 1068–1079
   DOI: 10.1002/jcc.22938
6. [GRNET] A.H.Poghosyan, L.H. Arsenyan, A.A. Shahinyan
   Molecular dynamics study of long chain alkyl sulfonate/water system
   Journal of Colloid and Interface Science, 2013, 29 (1), pp. 29–37
   DOI: 10.1021/la302378r
7. [IICT-BAS] E. Atanassov, T. Gurov, A. Karaivanova
   Capabilities of the HPC Cluster at IICT-BAS
   Automatika i Informatika,, 2011
   0861 -7562 DOI: ISSN 0861 -7562
8. * [IICT-BAS] T. Gurov, S. Ivanovska, A. Karaivanova, N. Manev
   A Study of a New Class of Congruential Generators for Monte Carlo Methods
   Journal Information Technologies and Control, 2013
   1312-2622 DOI: ISSN 1312-2622
9. * [IICT-BAS] N. Dodoff
   A DFT/ECP-Small Basis Set Modelling of Cisplatin: Molecular Structure and Vibrational Spectrum
   Computational Molecular Bioscience, 2012, 2, pp. 35-44
   DOI: 10.4236/cmb.2012.22004
10. * [IICT-BAS] E. Atanassov, D. Dimitrov
    Efficient Implementation of Heston Model Using GPGPU
    Monte Carlo Methods and Applications, 2012, pp. 21-28
    0929-9629 DOI: ISSN: 0929-9629
11. * [IPB] H. Terletska, J. Vucicevic, D. Tanaskovic and V. Dobrosavljevic
    Quantum Critical Transport Near the Mott Transition
    Physical Review Letters, 2011, 107, 026401
    DOI: 10.1103/PhysRevLett.107.026401; arxiv: 1012.5833
12. [IPB] B. L. M. Hendriksen, F. Martin, Y. Qi, C. Mauldin, N. Vukmirovic, J. Ren, H. Wormeester, A. J. Katan, V. Altoe, S. Aloni, J. M. J. Frechet, L. W. Wang and M. Salmeron
    Electrical Transport Properties of Oligothiophene Based Molecular Films Studied by Current Sensing Atomic Force Microscopy
    Nano Letters, 2011, 11 (10), pp. 4107–4112
    DOI: 10.1021/nl202720y
13. * [IPB] S. Tomic and N. Vukmirovic
    Symmetry Reduction in Multiband Hamiltonians for Semiconductor Quantum Dots: the Role of Interfaces and Higher Energy Bands
    Journal of Applied Physics, 2011, 110, 053710
    DOI: 10.1063/1.3631048
14. * [IPB-FCUB] Budimir Marjanovic, Ivan Juranic, and Gordana Ciric-Marjanovic
    Revised Mechanism of Boyland Sims Oxidation
    Journal of Physical Chemistry A , 2011, 115 (15), pp. 3536–3550
    DOI: 10.1021/jp111129t
15. [IPB-FCUB] B. Marjanovic, I. Juranic, G. Ciric-Marjanovic
    Comment on Revised Mechanism of Boyland-Sims Oxidation
    Journal of Physical Chemistry A, 2011, 115 (26), pp. 7865–7868
    DOI: 10.1021/jp2041845
16. * [IPB] I. H. Chu, M. Radulaski, N. Vukmirovic, H. P. Cheng and L. W. Wang
    Charge Transport in a Quantum Dot Supercrystal
    The Journal of Physical Chemistry C, 2011, 115 (43), pp. 21409–21415
    DOI: 10.1021/jp206526s
17. * [IPB] N. Vukmirovic and L. W. Wang
    Density of States and Wave Function Localization in Disordered Conjugated Polymers: a Large Scale Computational Study
    The Journal of Physical Chemistry B, 2011, 115 (8), pp. 1792–1797
    DOI: 10.1021/jp1114527
18. * [IPB] J. M. Granadino-Roldan, N. Vukmirovic, M. Fernandez-Gomez and L. W. Wang
    The Role of Disorder on the Electronic Structure of Conjugated Polymers. the Case of Poly-2,5-bis(phenylethynyl)-1,3,4-thiadiazole
    Physical Chemistry Chemical Physics, 2011, 13, pp. 14500-14509
    DOI: 10.1039/c1cp20329k
19. * [IPB] N. Vukmirovic and L. W. Wang
    Overlapping Fragments Method for Electronic Structure Calculation of Large Systems
    Journal of Chemical Physics, 2011, 134, 094119
    DOI: 10.1063/1.3560956
20. [IPB-FCUB] N. Trisovic, N. Valentic, M. Erovic, T. Djakovic-Sekulic, G. Uscumlic, I. Juranic
    Synthesis, structure, and solvatochromic properties of pharmacologically active 5-substituted 5-phenylhydantoins
    Monatshefte fuer Chemie, 2011, 142 (12), pp. 1227-1234
    DOI: 10.1007/s00706-011-0639-7
21. [IPB-FCUB] J. Savic, S. Dilber, B. Markovic, M. Milenkovic, S. Vladimirov, I. Juranic
    Docking Studies and α-Substitution Effects on the Anti-Inflammatory Activity of β-Hydroxy-β-arylpropanoic Acids
    Molecules, 2011, 16(8), pp. 6645-6655
    DOI: 10.3390/molecules16086645
22. [IPB] G. Liu, S. Xun, N. Vukmirovic, X. Song, P. Olaide-Velasco, H. Zheng, V. S. Battaglia, L. W. Wang and W. Yang
    Polymers with Tailored Electronic Structure for High Capacity Lithium Battery Electrodes
    Advanced Materials, 2011, 23 (40), pp. 4679–4683
    DOI: 10.1002/adma.201102421
23. * [IPB] M. Zezelj, V. Milanovic, J. Radovanovic and I. E. Stankovic
    Influence of Interface Roughness Scattering on Output Characteristics of GaAs/AlGaAs Quantum Cascade Laser in a Magnetic Field
    Journal of Physics D: Applied Physics, 2011, 44, 325105
    DOI: 10.1088/0022-3727/44/32/325105
24. [IPB-FCUB] B. J. Drakulic
    How to produce scientific paper using free-of-charge software
    Hemijski Pregled , 2011, 6 pp. 160-164
    0440-6826 DOI: ISSN: 0440-6826
25. [IPB-FCUB] B. Marjanovic, I. Juranic, G. Ciric-Marjanovic, I. Pasti, M. Trchova, P. Holler
    Chemical oxidative polymerization of benzocaine
    Reactive and Functional Polymers, 2011, 71 pp. 704–712.
    DOI: 10.1016/j.reactfunctpolym.2011.03.013
26. * [IPB] I. Vidanovic, A. Balaz, H. Al-Jibbouri and A. Pelster
    Nonlinear Bose-Einstein-condensate Dynamics Induced by a Harmonic Modulation of the S-wave Scattering Length
    Physical Review B, 2011, 84, 013618
    DOI: 10.1103/PhysRevA.84.013618; arxiv: 1106.4686
27. [IPB] Lj. Budinski-Petkovic, I. Loncarevic, Z. M. Jaksic, S. B. Vrhovac and N. M. Svrakic
    Simulation Study of Anisotropic Random Sequential Adsorption of Extended Objects on a Triangular Lattice
    Physical Review E, 2011, 84, 051601
    DOI: 10.1103/PhysRevE.84.051601
28. * [IPB] D. Tanaskovic, K. Haule, G. Kotliar and V. Dobrosavljevic
    Phase Diagram, Energy Scales, and Nonlocal Correlations in the Anderson Lattice Model
    Physical Review B, 2011, 84, 115105
    DOI: 10.1103/PhysRevB.84.115105; arxiv: 1106.4708
29. [IPB] A. Balaz, O. Prnjat, D. Vudragovic, V. Slavnic, I. Liabotis, E. Atanassov, B. Jakimovski and M. Savic
    Development of Grid E-Infrastructure in South-Eastern Europe
    Journal of Grid Computing, 2011, 9 (2), pp. 135-154
    DOI: 10.1007/s10723-011-9185-0
30. * [IPB] A. Balaz, I. Vidanovic, A. Bogojevic, A. Belic and A. Pelster
    Fast Converging Path Integrals for Time-Dependent Potentials: I. Recursive Calculation of Short-Time Expansion of the Propagator
    Journal of Statistical Mechanics, 2011, P03004
    DOI: 10.1088/1742-5468/2011/03/P03004
31. * [IPB] A. Balaz, I. Vidanovic, A. Bogojevic, A. Belic and A. Pelster
    Fast Converging Path Integrals for Time-Dependent Potentials: II. Generalization to Many-Body Systems and Real-Time Formalism
    Journal of Statistical Mechanics, 2011, P03005
    DOI: 10.1088/1742-5468/2011/03/P03005
32. [IPB] O. Prnjat, A. Balaz, D. Vudragovic, I. Liabotis, C. Sener, B. Marovic, M. Kozlovszky and G. Neagu
    SEE-GRID EInfrastructure for Regional EScience
    Book chapter in Data driven e-Science: Use Cases and Successful Applications of Distributed Computing Infrastructure, 2011, pp. 91-103
    DOI: 10.1007/978-1-4419-8014-4_7
33. * [IPB] N. Vukmirovic, C. Bruder and V. M. Stojanovic
    Electron-Phonon Coupling in Crystalline Organic Semiconductors: Microscopic Evidence for Nonpolaronic Charge Carriers
    Physical Review Letters, 2012, 109, 126407
    DOI: 10.1103/PhysRevLett.109.126407
34. * [IPB] A. Balaz, I. Vidanovic, D. Stojiljkovic, D. Vudragovic, A. Belic and A. Bogojevic
    SPEEDUP Code for Calculation of Transition Amplitudes Via the Effective Action Approach
    Communications in Computational Physics, 2012, 11, 739
    DOI: 10.4208/cicp.131210.180411a; arxiv: 1105.0542
35. * [IPB] N. Prodanovic, N. Vukmirovic, D. Indjin, Z. Ikonic and P. Harrison
    Electronic States and Intraband Terahertz Optical Transitions in InGaAs Quantum Rods
    Journal of Applied Physics, 2012, 111, 073110
    DOI: 10.1063/1.3692069
36. * [IPB] N. Vukmirovic, C. S. Ponseca, Jr., H. Nemec, A. Yartsev and V. Sundstrom
    Insights into the Charge Carrier Terahertz Mobility in Polyfluorenes from Large-Scale Atomistic Simulations and Time-Resolved Terahertz Spectroscopy
    The Journal of Physical Chemistry C, 2012, 116 (37), pp. 19665–19672
    DOI: 10.1021/jp3055262
37. * [IPB-FCUB] A. Z. Simic, T. Z. Verbic, M. N. Sentic, M. P. Vojic, I. O. Juranic, D. D. Manojlović
    Study of Ellagic Acid Electro-oxidation Mechanism
    Monatshefte fuer Chemie, 2012, 144 (2), pp. 121-128
    DOI: 10.1007/s00706-012-0856-8
38. * [IPB-FCUB] V. D. Vitnik, Z. J. Vitnik, I. O. Juranic
    Carbenic vs. ionic mechanistic pathway in reaction of cyclohexanone with bromoform
    Journal of Molecular Modeling, 2012, 18 (10), pp. 4721-4728
    DOI: 10.1007/s00894-012-1468-2
39. * [IPB] D. Vudragovic, I. Vidanovic, A. Balaz, P. Muruganandam and S. Adhikari
    C Programs for Solving the Time-dependent Gross-Pitaevskii Equation in a Fully Anisotropic Trap
    Computer Physics Communications, 2012, 183 (9), pp. 2021–2025
    DOI: 10.1016/j.cpc.2012.03.022
40. * [IPB] N. Lazarevic, M. M. Radonjic, R. Hu, D. Tanaskovic, C. Petrovic and Z. V. Popovic
    Phonon Properties of CoSb2 Single Crystals
    Journal of Physics: Condensed Matter, 2012, 24, 135402
    DOI: 10.1088/0953-8984/24/13/135402
41. * [IPB] N. Lazarevic, M. M. Radonjic, D. Tanaskovic, R. Hu, C. Petrovic and Z. V. Popovic
    Lattice Dynamics of FeSb2
    Journal of Physics: Condensed Matter, 2012, 24, 255402
    DOI: 10.1088/0953-8984/24/25/255402
42. * [IPB] Z. Papic, M. V. Milovanovic
    Disordering of the Correlated State of the Quantum Hall Bilayer at Filling Factor ν = 1
    Mod. Phys. Lett. B, 2012, 26, 1250134
    DOI: 10.1142/S0217984912501345
43. * [IPB] C. S. Ponseca, Jr. H. Nemec, N. Vukmirovic, S. Fusco, E. Wang, M. R. Andersson, P. Chabera, A. Yartsev, V. Sundstrom
    Electron and Hole Contributions to the Terahertz Photoconductivity of a Conjugated Polymer:Fullerene Blend Identified
    J. Phys. Chem. Lett. , 2012, 3 (17), pp. 2442–2446
    DOI: 10.1021/jz301013u
44. * [IPB-FCUB] M. D. Vitorovic-Todorovic, I. N. Cvijetic, I. O. Juranic, B. J. Drakulic
    The 3D-QSAR study of 110 diverse, dual binding, acetylcholinesterase inhibitors based on alignment independent descriptors (GRIND-2). The effects of conformation on predictive power and interpretability of the models
    Journal of Molecular Graphics and Modelling, 2012, 38 pp. 194–210
    DOI: 10.1016/j.jmgm.2012.08.001
45. * [IPB-FCUB] B. Drakulic, A. Marinkovic, I. Juranic
    On the choice of optimal conformation in linear free-energy relationships. Reactivity of 2-[(carboxymethyl)sulfanyl]-4-oxo-4-arylbutanoic acids with diphenyldiazomethane
    Tetrahedron Letters, 2012, 53 (5), pp. 553–556
    DOI: 10.1016/j.tetlet.2011.11.097
46. * [IPB-FCUB] B. Marjanovic, I. Juranic, G. Ciric-Marjanovic, M. Mojovic, I. Pasti, A. Janosevic, M. Trchova, P. Holler, J. Horsky
    Chemical oxidative polymerization of ethacridine
    Reactive and Functional Polymers, 2012, 72 (1), pp. 25–35
    DOI: 10.1016/j.reactfunctpolym.2011.10.002
47. * [IPB] M. Zezelj, I. Stankovic, A. Belic
    Finite-size Scaling in Asymmetric Systems of Percolating Sticks
    Physical Review E, 2012, 85, 021101
    DOI: 10.1103/PhysRevE.85.021101
48. * [IPB] A. Balaz and A. I. Nicolin
    Faraday Waves in Binary Nonmiscible Bose-Einstein Condensates
    Physical Review A, 2012, 85, 023613
    DOI: 10.1103/PhysRevA.85.023613
49. * [IPB] M. M. Radonjic, D. Tanaskovic, V. Dobrosavljevic, G. Kotliar and K. Haule
    Wigner-Mott Scaling of Transport Near the Two-dimensional Metal-insulator Transition
    Physical Review B, 2012, 85, 085133
    DOI: 10.1103/PhysRevB.85.085133
50. * [IPB] M. D. Petrovic and N. Vukmirovic
    Spin Relaxation in CdTe Quantum Dots with a Single Mn Atom
    Physical Review B, 2012, 85, 195311
    DOI: 10.1103/PhysRevB.85.195311
51. * [IPB] M. Zezelj and I. E. Stankovic
    From Percolating to Dense Random Stick Networks: Conductivity Model Investigation
    Physical Review B, 2012, 86, 134202
    DOI: 10.1103/PhysRevB.86.134202
52. * [IPB] J. Vucicevic, M. Goerbig and M. V. Milovanovic
    D-wave Superconductivity on the Honeycomb Bilayer
    Physical Review B, 2012, 86, 214505
    DOI: 10.1103/PhysRevB.86.214505
53. * [IPB] M. Mladenovic and I. E. Stankovic
    Monte Carlo Simulations of Crystalline Organic Semiconductors
    SJEE, 2013, 10, 125-134
    DOI: 10.2298/SJEE1301125M
54. * [IPB] I. Vidanovic, N. J. van Druten and M. Haque
    Spin Modulation Instabilities and Phase Separation Dynamics in Trapped Two-component Bose Condensates
    New J. Phys., 2013, 15, 035008
    DOI: 10.1088/1367-2630/15/3/035008
55. * [IPB] N. Vukmirovic
    A Comparative Study of Electronic Properties of Disordered Conjugated Polymers
    Physical Chemistry Chemical Physics, 2013, 15, pp. 3543-3551
    DOI: 10.1039/C3CP43115K
56. * [IPB] A. Bogojevic, A. Balaz, A. Belic
    Scaling Exponents and Phase Separation in a Nonlinear Network Model Inspired by the Gravitational Accretion
    Physica D, 2013, 255, pp. 52–57
    DOI: 10.1016/j.physd.2013.04.004
57. * [IPB] J. Smiljanic and I. E. Stankovic
    Efficient Routing on Small Complex Networks Without Buffers
    Physica A , 2013, 392 (9), pp. 2294–2301
    DOI: 10.1016/j.physa.2013.01.033
58. * [IPB] H. Al-Jibbouri, I. Vidanovic, A. Balaz and A. Pelster
    Geometric Resonances in Bose-Einstein Condensates with Two- and Three-body Interactions
    J. Phys. B, 2013, 46, 065303
    DOI: 10.1088/0953-4075/46/6/065303
59. * [IPB] N. Lazarevic, M. Radonjic, M. Scepanovic, H. Lei, D. Tanaskovic, C. Petrovic, Z. Popovic
    Lattice Dynamics of KNi2Se2
    Physical Review B, 2013, 87, 144305
    DOI: 10.1103/PhysRevB.87.144305
60. * [IPB] J. Ren, N. Vukmirovic, L. Wang
    Nonadiabatic Molecular Dynamics Simulation for Carrier Transport in a Pentathiophene Butyric Acid Monolayer
    Physical Review B, 2013, 87, 205117
    DOI: 10.1103/PhysRevB.87.205117
61. * [IPB-FCUB] J. Randjelovic, S. Eric, V. Savic
    Computational study and Peptide Inhibitors Design for the CDK9 – cyclin T1 Complex
    Journal of Molecular modeling, 2013. 19 (4), pp. 1711-1725
    DOI: 10.1007/s00894-012-1735-2
62. [IPB-FCUB] M. Grozdanovic, B. Drakulic, M. Gavrovic-Jankulovic
    Conformational mobility of active and E-64-inhibited actinidin
    Biochimica et Biophysica Acta,
    DOI: (submitted)
63. [IPB-FCUB] I. Cvijetic, M. Vitorovic-Todorovic, I. Juranic, B. Drakulic
    Michael addition of 2-mercaptoethanol to (E)-4-aryl-4-oxo-2-butenoic acid phenylamides. The LFER study
    Monatshefte fur Chemie,
    DOI: (submitted)
64. * [UPT]
    An algorithm for gravity anomaly inversion in HPC
    SCPE: Scalable Computing: Practice and Experience, 13 (2), pp. 51-60
    1895-1767 DOI: ISSN 1895-1767
65. [UKIM] Emilija Kohls, Anastas Mishev, Ljupčo Pejov
    Solvation of Fluoroform and Fluoroform – Dimethylether Dimer in Liquid Krypton: A Theoretical Cryospectroscopic Study
    Journal of Chemical Physics,
    DOI: (submitted)
66. [RENAM] RYBAKIN, B.; SIDER, N.
    Numerical modeling of multidimensional problems of gravitational gas dynamics with high resolution schemes
    Matematica, 2010, 1, pp. 92-102
    1024–7696 DOI: ISSN 1024–7696
67. [RENAM] B. Rybakin
    Parallel programming for graphics accelerators.” Under edition by Academician V.B. Betelin. Moscow, SIISI RAS, 2011, 261 p. (Рыбакин В.П. “Параллельное программирование для графических ускорителей." Под редакцией академика РАН В.Б. Бетелина. Москва, НИИСИ РАН, 2011, 261 стр.)
    monograph, 2011, pp. 261
    978-5-93838-046-2. DOI: ISBN 978-5-93838-046-2.
68. * [RENAM, IMI] PETRU BOGATENCOV, GRIGORE SECRIERU
    CALCULUL PERFORMANT: OPORTUNITĂŢI ŞI PERSPECTIVE PENTRU CERCETARE
    Revista de Ştiinţă, Inovare, Cultură şi Artă “ŞTIINŢĂ ŞI INOVARE” , 2012, 1 (24), pp. 64-69
    1857-0461 DOI: ISSN 1857-0461
69. [RENAM, IMI] A. ANDRIEŞ, I. TIGHINEANU, P. BOGATENCOV, I. COJOCARU, R.CUJBA.
    INIŢIATIVA REGIONALĂ DE DEZVOLTARE A EINFRASTRUCTURII PENTRU CERCETARE ŞI INOVARE – SEERA-EI
    Revista de Ştiinţă, Inovare, Cultură şi Artă “ŞTIINŢĂ ŞI INOVARE” , 2012, Nr. 1 (24), pp. 70-75
    1857-0461 DOI: ISSN 1857-0461
70. [RENAM] B.P. Rybakin, Е.V. Egorova, L.I. Stamov.
    The use of GPUs for solving problems of gas dynamics taking in account equations of chemical kinetics
    Journal of Computational Methods and Programming, 2013, 14 pp. 31-37
    1726-3522 DOI: ISSN 1726-3522
71. [RENAM] B.P. RYBAKIN
    Modeling of III-D problems of gas dynamics on multiprocessing computers and GPU
    Computers & Fluids, 2013, 80 pp. 403–407
    DOI: 10.1016/j.compfluid.2012.01.016
72. [RENAM,IMI ASM] B.P. Rybakin, E.V. Egorova, L.I. Stamov
    Speeding Up the Solution of Problems of Gas Dynamics and Combustion on Graphical Processors
    “Gas and wave dynamics” (Collection of articles),
    978-5-8112-4872-8 DOI: ISBN 978-5-8112-4872-8
73. * [IIAP_NAS_RA] A. Poghosyan, L. Arsenyan, H. Astsatryan, M. Gyurjyan, H. Keropyan and A. Shahinyan
    NAMD Package Benchmarking on the Base of Armenian Grid Infrastructure
    Journal of Communications and Network,, 2012, 4 (1), pp. 34-40
    DOI: 10.4236/cn.2012.41005
74. [IIAP_NAS_RA] A. Shahinyan, P. Hakobyan, L. Arsenyan, A. Poghosyan
    The study of lyotropic liquid crystal structure using the molecular dynamics method
     Journal of Molecular Crystals and Liquid Crystals, 2012, 561 (1), pp. 155-169
    DOI: 10.1080/15421406.2012.687174
75. [IIAP_NAS_RA] Hrachya Astsatryan, Vladimir Sahakyan, Yuri Shoukouryan, Michel Daydé, Aurelie Hurault, Ronan Guivarch, Arutyun Terzyan, Levon Hovhannisyan
    Services Enabling Large-Scale Linear Systems of Equations and Algorithms based on Integrated P-Grade Portlal
    Springer Journal of Grid Computing, 2013, 11 (2), pp. 239-248
    DOI: 10.1007/s10723-013-9254-7
76. * [IIAP_NAS_RA] Armen H. Poghosyan, Levon H. Arsenyan, Aram A. Shahinyan
    Molecular Dynamics Study of Intermediate Phase of Long Chain Alkyl Sulfonate/Water Systems
    Langmuir, 2013, 29 (1), pp. 29–37
    DOI: 10.1021/la302378r
77. [GRENA] J.A.Kereselidze, Z.V.Pachulia, T.Sh.Zarqua
    Quantum-chemical description of prototropic tautomerism of pyrimidine bases
    Chemistry of Heterocyclic Compounds, 2009, 45 (6), pp. 680-684
    DOI: 10.1007/s10593-009-0331-6
78. [GRENA] J. Kereselidze, Z. Pachulia and M. Kvaraia
    Quantum-chemical modeling of tendency of DNA to denaturetion
    J.Biol. Phys. Chem.,
    1512-0856 DOI: ISSN: 1512-0856

Proceedings

1. [GRNET, IMBB] Oulas A, Iliopoulos I., Poirazi P. and Kalantidis K.
   Prediction of miRNA gene targets: a combined computational and experimental approach
   ΙSMB/ECCB 2011 meeting,Vienna, Austria, 17-19 July, 2011
2. [GRNET, IMBB] Daphne Krioneriti, Athanasia Papoutsi and Panayiota Poirazi
   Mechanisms underlying the emergence of Up and Down states in a model PFC microcircuit
   CNS 2011 meeting,Stocholm, Sweden, 23-28 July, 2011
3. [GRNET, IMBB] P. Poirazi
   Dendrites and information processing: insights from compartmental models
   CNS*2011 workshop on ‘Dendrite function and wiring: experiments and theory”,Stocholm, Sweden, 27 July, 2011
4. [IICT-BAS] T. Gurov, S. Ivanovska, A. Karivanova and N. Manev
   Monte Carlo methods using a New Class of Congruential Generators
   ICT Innovations 2011,Skopje, FYR Macedonia, 14-16 September 2011
5. [IICT-BAS] T. Gurov, S. Ivanovska, A. Karivanova and N. Manev
   Monte Carlo methods using a New Class of Congruential Generators
   ICT Innovations 2011,Skopje, FYR Macedonia, 14-16 September 2011
6. [IICT-BAS] E. Atanassov, D. Dimitrov
   Pricing Financial Derivatives on GPU
   BGSIAM’11,Sofia, Bulgaria, 21-22 December, 2011
7. [IICT-BAS] T. Gurov, E. Atanassov, A. Karaivanova
   Monte Carlo methods for Electron Transport: Scalability Study
   Proceeding of 11th ISPDC2012 - The 11th International Symposium on Parallel and Distributed Computing - ISPDC 2012,Munich, Germany, 25-29 June, 2012
8. [IICT-BAS, IM-BAS] K. Shterev, N. Kulakarni, S. Stefanov
   Influence of Reservoirs on Pressure Driven Gas Glowin a Micro-channel
   3rd AMITANS’11 Conference,Albena, Bulgaria, 20-25 June, 2011
9. [IFIN HH] Petcu, Dana; Zaharie, Daniela; Panica, Silviu; Hussein, Ashraf S.; Sayed, Ahmed; El-Shishiny, Hisham
   Fuzzy Clustering of Large Satellite Images using High Performance Computing
   SPIE Remote Sensing Conference: High-Performance Computing in Remote Sensing,Prague, Czech Republic, 19-22 September 2011
10. [IFIN HH, UPB] A. Stroe, E. Slusanschi, A. Stroe, S. Posea
    Airflow Simulator Heat Transfer Computer Simulations of the NCIT-Cluster Datacenter
    18th International Conference on Control Systems and Computer Science,Bucharest, Romania, 24-27 May, 2011
11. [IFIN HH, UPB] M. Poke, E. Slusanschi, D. Podareanu, A. Herisanu
    Parallel Numerical Simulations in Aerodynamics
    18th International Conference on Control Systems and Computer Science,Bucharest, Romania, 24-27 May, 2011
12. [IFIN HH, UPB] A. Gainaru, E. Slusanschi, S. Trausan-Matu
    Mapping data mining algorithms on a GPU architecture: A study
    19th International Symposium on Methodologies for Intelligent Systems,Warsaw, Poland , 28-30 June, 2011
13. [IFIN HH, UPB] A. Gainaru, E. Slusanschi
    Framework for mapping data mining applications on GPUs
    10th International Symposium on Parallel and Distributed Computing ,Cluj-Napoca, Romania, 6-8 July, 2011
14. [IFIN HH, UPB] V. Spoiala, E. Slusanschi, M. Dagadita, C. Bancu
    Parallelization of High Dynamic Range Image Creation on Multi-Core Processor Architectures
    10th International Symposium on Parallel and Distributed Computing ,Cluj-Napoca, Romania, 6-8 July, 2011
15. [NIIF] M. Kozlovszky, A. Balasko, P. Kacsuk
    Enabling JChem application on grid
    ISGC 2011 & OGF 31, The International Symposium on Grids and Clouds (ISGC 2011) & Open Grid Forum (OGF 31) ,Taipei Taiwan, 19-23 March, 2011
16. [NIIF] M. Kozlovszky, G. Windisch, Á. Balaskó
    Short fragment sequence alignment on the HP-SEE infrastructure
    MIPRO 2012,Opatija, Croatia, 24 May, 2012
17. [IPB] A. Belic
    Numerical Simulations of Complex Systems in Quantum and Classical Physics
    SFKM (2011) ,Belgrade, Serbia, 18-22 April, 2011
18. [IPB] I. Vidanovic, A. Balaz, H. Al-Jibbouri, A. Pelster
    Nonlinear BEC Dynamics by Harmonic Modulation of s-wave Scattering Length
    SFKM (2011) ,Belgrade, Serbia, 18-22 April, 2011
19. [IPB] A. I. Nicolin, A. Balaz
    Numerical Simulations of Faraday Waves in Binary Bose- Einstein Condensates
    12th International NTZ-Workshop on New Developments in Computational Physics (2011) CompPhys11,Leipzig, Germany, 24-26 November, 2011
20. [IPB] I. Vidanovic, H. Al-Jibbouri, A. Balaz and A. Pelster
    Parametric and Geometric Resonances of Collective Oscillation Modes in Bose-Einstein Condensates
    Photonica 2011,Belgrade, Serbia, 29-31, August 2011
21. [IPB] B. Nikolic, A. Balaz, A. Pelster
    Dipolar Bose-Einstein Condensates in Weak Anisotropic Disorder Potentials
    Quo Vadis BEC? IV conference,Bad Honnef, Germany, 21-25 August 2012
22. [IPB] H. Al-Jibbouri, I. Vidanovic, A. Balaz, A. Pelster
    Geometric Resonances in Bose-Einstein Condensates with Two- and Three-Body Interactions
    Quo Vadis BEC? IV conference,Bad Honnef, Germany, 21-25 August 2012
23. [IPB] T. Khellil, A. Balaz, A. Pelster
    Numerical Solutions of Gross-Pitaevskii equation for a disordered Bose condensed gas
    Quo Vadis BEC? IV conference,Bad Honnef, Germany, 21-25 August 2012
24. [IPB] A. Balaz and A. I. Nicolin
    Numerical Study of Faraday Waves in Binary Non-miscible Bose-Einstein Condensates
    LENCOS 2012 Conference,Seville, Spain, 9-12 July 2012
25. [IPB] M. Mladenovic and I. E. Stankovic
    Monte Karlo simulacije kristalnih organskih poluprovodnika
    56th ETRAN (2012),Zlatibor, Serbia, June 11 – 14, 2012
26. [IPB-FCUB] T. Verbic, M. Zloh, D. Stankovic, M. Sentic, D. Manojlovic, I. Juranic
    Keto-enol Tautomerism of Aryldiketo Acids in Aqueous Solution. NMR Spectroscopy and Cyclic Voltammetry Study
    49th Meeting of the Serbian Chemical Society,Kragujevac, Serbia, 13-14 May, 2011
27. [IPB-FCUB] B. J. Drakulic, F. T. Pastor and I. O. Juranic
    Half-wave reduction potentials of unsaturated ketones. On frontier molecular orbitals and linear free energy relationships
    IMA2011 - The 7-th International Conference on Instrumental Methods of Analysis. Modern Trends and Applications,Chania, Crete, Greece, 18-22, Sept. 2011
28. [IPB-FCUB] M.D. Vitorović-Todorović, B.J. Drakulić
    Unconstrained, unbiased, MD simulation of the low nanomolar dual AChE inhibitor interaction with the enzyme
    15th Hellenic Symposium on Medicinal Chemistry, Athens, Greece, 25-27 May, 2012
29. [IPB-FCUB] B.J. Drakulić, C-Z. Dragos, V. Ionut, P. Ivanov, N. Dodoff, A. Karaivanova, I.O. Juranić
    The medicinal chemistry-related applications in HP-SEE project. An end-user view
    15th Hellenic Symposium on Medicinal Chemistry, Athens, Greece, 25-27 May, 2012
30. [IPB-FCUB] I. Juranic
    Joint Impact of Light and of Air Pollutants on the Preservation of Cultural Heritage
    4th International Conference, Science and Higher Education in Function of Sustainable Development, SED 2011,Uzice, Serbia, 7-8 October, 2011
31. [IPB-FCUB] I. Juranic
    Photochemical activation of air pollutants related to the preservation of cultural heritage
    International Congress "Engineering, Ecology and Materials in Processing Industry", Jahorina, Bosnia and Herzegovina, 9-11 March, 2011
32. [IPB-FCUB] B. J. Drakulic, Z. S. Zizak, T. P. Stanojkovic, S. Ristic, D. M. Godjevac, I. O. Juranic
    2-[(Carboxymethyl)sulfanyl]-4-oxo-4-arylbutanoic acids. Part 3. Pharmacology and conformational preferences in different solvents. the NMR/MD study
    19th EuroQSAR, Knowledge Enabled Ligand Design,Vienna, Austria, August 26-30, 2012
33. [IPB-FCUB] M. D. Vitorovic-Todorovic, C. Koukoulitsa, I. O. Juranic, B. J. Drakulic
    4-Aryl-4-oxo-N-phenyl-2-aminylbutyramides with interesting AChE/BChE selectivity profile
    19th EuroQSAR, Knowledge Enabled Ligand Design,Vienna, Austria, August 26-30, 2012
34. [UPT] N. Frasheri, B. Cico
    Analysis of the Convergence of iterative Gravity Inversion in Parallel Systems
    ICT Innovations 2011,Skopje, FYR Macedonia, 14-16 September 2011
35. [UPT ] Frasheri, S. Bushati
    An Algorithm for Gravity Anomaly Inversion in HPC
    SYNASC 2011 - 13th International Symposium on Symbolic and Numeric Algorithms for Scientific Computing,Timisoara, Romania, 26-29 September, 2011
36. [UPT] Bozo Krstajic
    Convergence of gravity inversion using OpenMP
    XVII Scientific-Professional Information Technology Conference 2012,Zabljak, Montenegro, 27 February - 2 March, 2012
37. [UPT] N. Frasheri, B. Cico
    Scalability of Geophysical Inversion With OpenMP and MPI in Parallel Processing
    ICT Innovations 2012 ,Ohrid, FYR Macedonia , 12-15 Sept 2012
38. [UKIM] Anastas Misev, Dragan Sahpaski and Ljupco Pejov
    Implementation of Hybrid Monte Carlo (Molecular Dynamics) – Quantum Mechanical Methodology for Modelling of Condensed Phases on High Performance Computing Environment
    ICT Innovations 2011,Skopje, FYR Macedonia, 14-16 September 2011
    Springer Advances in Intelligent and Soft Computing, 2012, Volume 150/2012, 269-277, DOI: 10.1007/978-3-642-28664-3_25
39. [UKIM] Jane Jovanovski, Boro Jakimovski and Dragan Jakimovski
    Parallel Genetic Algorithms for Finding Solution of System of Ordinary Differential Equations
    ICT Innovations 2011,Skopje, FYR Macedonia, 14-16 September 2011
    Springer Advances in Intelligent and Soft Computing, 2012, Volume 150/2012, 227-237, DOI: 10.1007/978-3-642-28664-3_21
40. [UKIM] J. Jovanovski, B. Jakimovski and D. Jakimovski
    Improvements of the Parallel Evolutionary Algorithm for finding solution of a system of ordinary differential equations
    The 9th Conference for Informatics and Information Technology (CIIT 2012),Bitola, Macedonia, 19-22 April 2012, in print
41. [UKIM] D. Sahpaski, L. Pejov, A. Misev
    Optimization of Intermolecular Interaction Potential Energy Parameters for Monte-Carlo and Molecular Dynamics Simulations Using Genetic Algorithms
    Large-Scale Scientific Computations 2011,Sozopol, Bulgaria, 6-10 June, 2011
    Springer Lecture Notes in Computer Science Volume 7116, 2012, pp 464-471
42. [UOM ] Luka Filipovic
    Optimization of cq switch simulator using parallel programming methods
    XVII Scientific-Professional Information Technology Conference 2012,Zabljak, Montenegro, 27 February - 2 March, 2012
43. [UOM] Sidita Duli, Bozo Krstajic
    Pthread in a weibull distribution parameters estimator
    XVII Scientific-Professional Information Technology Conference 2012,Zabljak, Montenegro, 27 February - 2 March, 2012
44. [RENAM] ŞIDER, N.I.
    An adaptive mesh refinement technique for gas dynamics
    Conferinţa Internatională a Tinerilor Cercetători, editia a VIII-a ,Chisinau, Moldova, 11-12 November, 2010
45. [RENAM] GOLUBEV Alexandr, BOGATENCOV Peter, SECRIERU Grigore, ILIUHA Nicolai
    DICOM Network - Solution for Medical Imagistic Investigations Exchange
    International Workshop on Intelligent Information Systems,Chisinau, Moldova, 13-14 September, 2011
46. [RENAM] ILIUHA Nicolai, ALTUHOV Alexei, BOGATENCOV Peter, SECRIERU Grigore, GOLUBEV Alexandr
    SEE-HP project – providing access to the Regional High Performance computing infrastructure
    International Workshop on Intelligent Information Systems,Chisinau, Moldova, 13-14 September, 2011
47. [RENAM] B. Rybakin
    Modeling of III-D Problems of Gas Dynamics on Multiprocessing Computers and GPU
    23rd International Conference on Parallel Computational Fluid Dynamics,,Barcelona, Spain, 16-20 May, 2011
48. [RENAM] РЫБАКИН, Б.П.
    Решение III-d задач газовой динамики на графических ускорителях
    International Supercomputing Conference "Scientific Services in Internet: Exaflops Future",Novorossiysk, Russia, 19-24 September, 2011
49. [RENAM] РЫБАКИН, Б.П.; ЕГОРОВА, Е.В.
    Решение задач газовой динамики на графических ускорителях
    International Supercomputing Conference "Scientific Services in Internet: Exaflops Future",Novorossiysk, Russia, 19-24 September, 2011
50. [RENAM] РЫБАКИН, Б.П.; СТАМОВ, Л.И.
    Использование многопроцессорных вычислительных систем и графических ускорителей для моделирования задач газодинамики
    International Supercomputing Conference "Scientific Services in Internet: Exaflops Future",Novorossiysk, Russia, 19-24 September, 2011
51. [RENAM] B. Rybakin, G. Secrieru, E. Gutuleac
    Research of the intense-deformed condition of elastic-plastic shells under the influence of intensive dynamic loadings
    19-th Edition of the Annual Conference on Applied and Industrial Mathematics- CAIM,Laşi, Romania, 22-25 September, 2011
52. [RENAM] A. Altuhov, P. Bogatencov, A. Golubev, N. Iliuha, G. Secrieru
    Networking in Education and Research
    10th RoEduNet IEEE International Conference,Lasi, Romania, 23-25 June, 2011
53. [RENAM] RYBAKIN, B.; STRELNIKOVA, E.; SECRIERU, G.; GUTULEAC, E.
    Computer simulation of dynamic loading of fluid-filled shell structures
    Rezumatele Conferenţei „Mathematics & Information technologies: Research and Education (MITRE-2011)”,Chişinău, Moldova, 22-25 August, 2011
54. [RENAM, IMI] PETRU BOGATENCOV, GRIGORE SECRIERU, NICOLAI ILIUHA
    Сеть науки и образования как инфраструктура для Grid – приложений
    4th International Conference “Telecommunications, Electronics and Informatics”,Republic of Moldova, Chişinău, 17-20 May, 2012
55. [RENAM, IMI] Б. РЫБАКИН, Г. СЕКРИЕРУ, Е. ГУЦУЛЯК
    Численное моделирование воздействия на снаряд со взрывателем в зависимости от формы и местоположения инициирующего взрывчатого вещества.
    4th International Conference “Telecommunications, Electronics and Informatics”,Republic of Moldova, Chişinău, 17-20 May, 2012
56. [RENAM, IMI] РЫБАКИН, Б.П.; СЕКРИЕРУ, Г.В.
    Численное моделирование процессов нагружения и деформирования объектов заглубленных в грунт
    Materialele Conferinţei Internaţionale „Modelare matematică, optimizare şi tehnologii informaţionale”, Chişinău, Moldova, 19-23 March, 2012
57. [RENAM, IMI] P.P. Bogatencov, N.P. Iliuha, G.V. Secrieru, P.M. Vaseanovici
    PARTCIPATION OF MD-GRID NGI IN EGI-INSPIRE PROJECT – IMPACT ON GRID TECHNOLOGIES DEVELOPMENT IN MOLDOVA
    The 5th International Conference "Distributed Computing and Grid-technologies in Science and Education",Dubna, Russia, 16-21 July, 2012
58. [RENAM, IMI] G.Secrieru, P.Bogatencov, E.Gutuleac, N.Iliuha
    Access to the regional HPC resources and strategy of their development
    20-th Conference on Applied and Industrial Mathematics dedicated to academician Mitrofan M.Ciobanu,Chisinau, Moldova, 22-25 August, 2012
59. [IIAP_NAS_RA] A.H. Poghosyan, L. H. Arsenyan, H.V. Astsatryan
    Comparative NAMD Benchmarking of Complex System on Bulgarian BlueGene/P, IEEE Proceedings of Distributed Computing and Visualization Systems
    IEEE Proceedings of Distributed Computing and Visualization Systems, MIPRO 2012 - Jubilee 35th International Convention,Opatija, Croatia, 24 May, 2012
60. [GRENA] J. Kereselidze, T. Zarqua, Z. Paculia, M. Kvaraia
    Quantum Chemical Modeling of the Mechanism of Formation of the Peptide Bond.
    International Conference on Computational Biology,Tokyo, Japan, 26-28 May, 2010