Interactive jobs
From HP-SEE Wiki
(Difference between revisions)
(Created page with "CMSLTM @IMBB Jobs were submitted to the PBS queue manager Example script: <code> #!/bin/bash #PBS -q lifesci #PBS -l nodes=2:ppn=5 #PBS -l walltime=10:00:00 # PBS_O_WORKDIR=...") |
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Example script: | Example script: | ||
| - | < | + | <source lang="bash"> |
#!/bin/bash | #!/bin/bash | ||
#PBS -q lifesci | #PBS -q lifesci | ||
| Line 21: | Line 21: | ||
$MPIEXEC -np NPROCS $NRNIV -dll "$NLIBS" -mpi finalpar.hoc | $MPIEXEC -np NPROCS $NRNIV -dll "$NLIBS" -mpi finalpar.hoc | ||
date +%s >> times.txt | date +%s >> times.txt | ||
| - | </ | + | </source> |
Invocation: | Invocation: | ||
Revision as of 10:04, 22 March 2012
CMSLTM @IMBB
Jobs were submitted to the PBS queue manager
Example script:
<source lang="bash">
- !/bin/bash
- PBS -q lifesci
- PBS -l nodes=2:ppn=5
- PBS -l walltime=10:00:00
- PBS_O_WORKDIR=/home/gkastel/layer_V1/experiment/
- PBS_NODEFILE="/home/gkastel/layer_V1/experiment/nodelist.txt"
MPIEXEC="/usr/mpi/gcc/openmpi-1.4.3/bin/mpiexec" cd $PBS_O_WORKDIR NPROCS=10 NRNIV=/home/gkastel/src/nrn-7.1/x86_64/bin/nrniv NLIBS=/home/gkastel/layer_V1/mechanism/x86_64/.libs/libnrnmech.so date +%s > times.txt echo >> times.txt $MPIEXEC -np NPROCS $NRNIV -dll "$NLIBS" -mpi finalpar.hoc date +%s >> times.txt </source>
Invocation:
qsub script-name.sh
