Interactive jobs

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Revision as of 10:03, 22 March 2012 by Lifesci (Talk | contribs)
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CMSLTM @IMBB

Jobs were submitted to the PBS queue manager

Example script:

  1. !/bin/bash
  2. PBS -q lifesci
  3. PBS -l nodes=2:ppn=5
  4. PBS -l walltime=10:00:00
  5. PBS_O_WORKDIR=/home/gkastel/layer_V1/experiment/
  6. PBS_NODEFILE="/home/gkastel/layer_V1/experiment/nodelist.txt"

MPIEXEC="/usr/mpi/gcc/openmpi-1.4.3/bin/mpiexec" cd $PBS_O_WORKDIR NPROCS=10 NRNIV=/home/gkastel/src/nrn-7.1/x86_64/bin/nrniv NLIBS=/home/gkastel/layer_V1/mechanism/x86_64/.libs/libnrnmech.so date +%s > times.txt echo >> times.txt $MPIEXEC -np NPROCS $NRNIV -dll "$NLIBS" -mpi finalpar.hoc date +%s >> times.txt

Invocation: qsub script-name.sh

Retrieved from "http://hpseewiki.ipb.ac.rs/index.php/Interactive_jobs"
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