Job Annotation

From HP-SEE Wiki

Revision as of 14:58, 19 February 2013 (view source) Gurov (Talk | contribs) (→Annotating on TORQUE) ← Older edit		Latest revision as of 15:38, 25 February 2013 (view source) Roczei (Talk | contribs) (→SGE configuration)
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	* [[Resource centre PARADOX]]		* [[Resource centre PARADOX]]
	* [[Resource centre IFIN]]		* [[Resource centre IFIN]]
-	* [[Resource centre NCIT]]	+	* [http://cluster.grid.pub.ro/ Resource centre NCIT]
	== '''Annotating on SGE''' ==		== '''Annotating on SGE''' ==
-	''todo''	+	=== SGE configuration ===
		+
		+	HP-SEE application names should be added as project names to the SGE database. This script will help you by this. It imports the names from the SEE LDAP: [[Media:Ge_see-ldap_sync.sh.tgz‎ |Ge_see-ldap_sync.sh.tgz‎]]
		+
		+	=== Usage ===
		+
		+	Users can either annotated their jobs in the '''''qsub''''' command:
		+
		+	qsub -P [HP-SEE Application Name] shell.sh
		+
		+	or in the submission shell script using a '''''SGE directive''''':
		+
		+	#$ -P [HP-SEE Application Name]
		+
		+	Sites using SGE:
		+
		+	* [http://hpseewiki.ipb.ac.rs/index.php/Resource_centre_Debrecen_SC Resource centre Debrecen SC]
		+	* [http://hpseewiki.ipb.ac.rs/index.php/Resource_centre_NIIFI_SC Resource centre NIIFI SC]
		+	* [http://hpseewiki.ipb.ac.rs/index.php/Resource_centre_Pecs_SC Resource centre Pecs SC]
		+	* [http://hpseewiki.ipb.ac.rs/index.php/Resource_centre_Szeged_SC Resource centre Szeged SC]
	== '''Annotating on LoadLeveler''' ==		== '''Annotating on LoadLeveler''' ==

---

Latest revision as of 15:38, 25 February 2013

In order to successfully collect accounting data users are requested to annotate each of their job submissions with their HP-SEE application. Although technically this is required only for HP-SEE users with more than one application, annotations of jobs are strongly encouraged for all users.

Contents 1 Annotating on TORQUE 2 Annotating on SGE 2.1 SGE configuration 2.2 Usage 3 Annotating on LoadLeveler 4 Recognized Application Names

Annotating on TORQUE

TORQUE jobs can be easily annotated with the account string flag. Users can either annotated their jobs in the qsub command:

   qsub -A [HP-SEE Application Name] shell.sh

or in the submission shell script using a PBS directive:

   #PBS -A [HP-SEE Application Name]

Sites using TORQUE:

• Resource centre HPCG
• Resource centre PARADOX
• Resource centre IFIN
• Resource centre NCIT

Annotating on SGE

SGE configuration

HP-SEE application names should be added as project names to the SGE database. This script will help you by this. It imports the names from the SEE LDAP: Ge_see-ldap_sync.sh.tgz‎

Usage

Users can either annotated their jobs in the qsub command:

   qsub -P [HP-SEE Application Name] shell.sh

or in the submission shell script using a SGE directive:

   #$ -P [HP-SEE Application Name]

Sites using SGE:

• Resource centre Debrecen SC
• Resource centre NIIFI SC
• Resource centre Pecs SC
• Resource centre Szeged SC

Annotating on LoadLeveler

todo

Recognized Application Names

• CompChem VRC
  • CFDOF
  • CompChem
  • FMD-PA
  • HC-MD-QM-CS
  • ISyMAB
  • MDCisplatin
  • PCACIC

• CompPhys VRC
  • AMR_PAR
  • EagleEye
  • FAMAD
  • FuzzyCmeans
  • GENETATOMICS
  • GIM
  • HAG
  • HMLQCD
  • NUQG
  • SET
  • SFHG
  • SIMPLE-TS_2D

• LifeSci VRC
  • CMSLTM
  • DeepAligner
  • DiseaseGene
  • DNAMA
  • MDSCS
  • miRs
  • MSBP

• NewApps VRC
  • ISTORM
  • ARP23
  • HPS
  • CQS
  • TDN-SIM
  • TCR-MHC
  • DynAPSNeur
  • IPA2SPE
  • HGRF
  • NUM-EXP-NAT-CONV
  • PhyloTree
  • SU3-GT
  • PALSC-AMC

• FastTrack VRC
  • LNAWENR
  • ARMSATGEO
  • SyMBA_GPU