Job Annotation
From HP-SEE Wiki
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=== SGE configuration === | === SGE configuration === | ||
- | HP-SEE | + | HP-SEE application names should be added as project names to the SGE database. This script will help you by this. It imports the names from the SEE LDAP : [[Media:Ge_see-ldap_sync.sh.tgz |Ge_see-ldap_sync.sh.tgz]] |
=== Usage === | === Usage === |
Revision as of 15:38, 25 February 2013
In order to successfully collect accounting data users are requested to annotate each of their job submissions with their HP-SEE application. Although technically this is required only for HP-SEE users with more than one application, annotations of jobs are strongly encouraged for all users.
Contents |
Annotating on TORQUE
TORQUE jobs can be easily annotated with the account string flag. Users can either annotated their jobs in the qsub command:
qsub -A [HP-SEE Application Name] shell.sh
or in the submission shell script using a PBS directive:
#PBS -A [HP-SEE Application Name]
Sites using TORQUE:
Annotating on SGE
SGE configuration
HP-SEE application names should be added as project names to the SGE database. This script will help you by this. It imports the names from the SEE LDAP : Ge_see-ldap_sync.sh.tgz
Usage
Users can either annotated their jobs in the qsub command:
qsub -P [HP-SEE Application Name] shell.sh
or in the submission shell script using a SGE directive:
#$ -P [HP-SEE Application Name]
Sites using SGE:
- Resource centre Debrecen SC
- Resource centre NIIFI SC
- Resource centre Pecs SC
- Resource centre Szeged SC
Annotating on LoadLeveler
todo
Recognized Application Names
- CompChem VRC
- CFDOF
- CompChem
- FMD-PA
- HC-MD-QM-CS
- ISyMAB
- MDCisplatin
- PCACIC
- CompPhys VRC
- AMR_PAR
- EagleEye
- FAMAD
- FuzzyCmeans
- GENETATOMICS
- GIM
- HAG
- HMLQCD
- NUQG
- SET
- SFHG
- SIMPLE-TS_2D
- LifeSci VRC
- CMSLTM
- DeepAligner
- DiseaseGene
- DNAMA
- MDSCS
- miRs
- MSBP
- NewApps VRC
- ISTORM
- ARP23
- HPS
- CQS
- TDN-SIM
- TCR-MHC
- DynAPSNeur
- IPA2SPE
- HGRF
- NUM-EXP-NAT-CONV
- PhyloTree
- SU3-GT
- PALSC-AMC
- FastTrack VRC
- LNAWENR
- ARMSATGEO
- SyMBA_GPU